计算系统生物学中并行随机仿真方法研究进展
收稿日期: 2010-03-01
修回日期: 2010-06-07
网络出版日期: 2010-09-02
基金资助
国家自然科学基金资助项目(60773019,60873120);教育部博士点基金资助项目(200899980004)
Parallel Stochastic Simulation in Computational Systems Biology
Received date: 2010-03-01
Revised date: 2010-06-07
Online published: 2010-09-02
王兵,姚益平,邢飞 . 计算系统生物学中并行随机仿真方法研究进展[J]. 计算机工程与科学, 2010 , 32(9) : 134 -138 . DOI: 10.3969/j.issn.1007130X.2010.
Stochastic Simulation is a very important method for the research of discrete stochastic models in the field of Computational Systems Biology. In this paper, the principles and parallel approaches of Stochastic Simulation are reviewed. It is pointed out that parallel simulation is a significant approach to overcome the performance pitfalls in stochastic simulation. With the classification of coarse grain and fine grain, the status quo of the parallel stochastic simulation is surveyed firstly. Stressing on the spatial parallelism, the stochastic simulation of the reaction and diffusion system and the related tools are reviewed. Finally, the paper is covered by a discussion on the future work.
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