基于多特征尺度的大肠杆菌启动子预测
收稿日期: 2010-03-13
修回日期: 2010-06-10
网络出版日期: 2010-09-02
基金资助
内蒙古大学青年科学基金资助项目(ND0810);电子科技大学科研启动费资助项目
Prediction of the E.coliK12 Promoter Based on MultiFeature Selection
Received date: 2010-03-13
Revised date: 2010-06-10
Online published: 2010-09-02
杨乌日吐1,林昊2 . 基于多特征尺度的大肠杆菌启动子预测[J]. 计算机工程与科学, 2010 , 32(9) : 148 -151 . DOI: 10.3969/j.issn.1007130X.2010.
According to the known knowledge of 741 experimentally confirmed Sigma70 promoters, the promoters are predicted. At first, based on the interaction between RNAp and DNA elements, the positioncorrelationscorefunction (PCSF) algorithm is used to measure the conservative sits in promoter sequences. Subsequently, according to the characteristics of promoters, a diversity index is applied to measure the information content in different regions. Finally, the modified Mahalanobis Discriminant is proposed to perform prediction. The overall accuracies of 10fold crossvalidation of 85%+ are achieved. By comparing with other methods, it is shown that the proposed method can recognize the Escherichia coli promoters with high accuracy.
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