[1] |
黄宇星,刘二伟.联合用药的药物相互作用及研究方法[J].药物评价研究,2014,37(3):276-279.
|
|
Huang Yu-xing,Liu Er-wei.Drug interactions and research methods of drug combination [J].Drug Evaluation Research,2014,37(3):276-279.
|
[2] |
Bansal M,Yang J,Karan C,et al.A community computational challenge to predict the activity of pairs of compounds[J].Nature Biotechnology,2014,32(12):1213-1222.
|
[3] |
Sun M,Zhao S,Gilvary C,et al.Graph convolutional networks for computational drug development and discovery[J].Briefings in Bioinformatics,2020,21(3):919-935.
|
[4] |
Lazarou J,Pomeranz B H,Corey P N.Incidence of adverse drug reactions in hospitalized patients:A meta-analysis of prospective studies[J].The Journal of the American Medical Association,1998,279(15):1200-1205.
|
[5] |
Adam G, Rampek L,Safikhani Z,et al.Machine learning approaches to drug response prediction:Challenges and recent progress[J].NPJ Precision Oncology,2020,4(1):19.
|
[6] |
沙碧君,周素凤,王璐,等.药物相互作用临床研究方法及进展[J].中国临床药理学与治疗学,2019,24(9):1037-1045.
|
|
Sha Bi-jun, Zhou Su-feng, Wang Lu, et al. Methods and progress of clinical research on drug-drug interactions[J]. Chinese Journal of Clinical Pharmacology and Therapeutics,2019,24(9):1037-1045.
|
[7] |
Qato D M,Wilder J,Schumm L P,et al.Changes in prescription and over-the-counter medication and dietary supplement use among older adults in the United States,2005 vs 2011[J].JAMA Internal Medicine,2016,176(4):473-482.
|
[8] |
Roblek T,Vaupotic T,Mrhar A,et al.Drug-drug interaction software in clinical practice:A systematic review[J].European Journal of Clinical Pharmacology, 2015,71(2):131-142.
|
[9] |
刘悦,龚辉,单青,等.老年患者长期用药的潜在药物相互作用及其影响因素分析[J].解放军医学院学报,2023,44(6):587-593.
|
|
Liu Yue,Gong Hui,Shan Qing,et al.Potential drug-drug interactions and its associated factors in long-term drug use in elderly patients[J].Academic Journal of Chinese PLA Medical School,2023,44(6):587-593.
|
[10] |
胡鹏,阚红星,王永康,等.基于异构图注意力网络的药物相互作用预测[J].中国医疗设备,2023,38(5):110-114.
|
|
Hu Peng,Kan Hong-xing,Wang Yong-kang,et al,Drug interaction prediction based on heterogeneous graph attention network[J].China Medical Devices,2023,38(5):110-114.
|
[11] |
杨浩艺,陈微,姚泽欢,等.基于转录组学数据的抗真菌药物预测方法研究[J].计算机工程与科学,2023,45(2):246-251.
|
|
Yang Hao-yi,Chen Wei,Yao Ze-huan,et al.Antifungal drug discovery base on transcriptome data of cell response[J]. Computer Engineering & Science,2023,45(2):246-251.
|
[12] |
Hughes J P,Rees S,Kalindjian S B,et al.Principles of early drug discovery[J].British Journal of Pharmacology,2011,162(6):1239-1249.
|
[13] |
刘璐,陈笑艳.国产小分子化学创新药临床药物相互作用研究现状[J].中国临床药理学与治疗学,2021,26(8):863-875.
|
|
Liu Lu,Chen Xiao-yan.Current status of clinical drug-drug interactions research of innovative small molecule drugs in China [J].Chinese Journal of Clinical Pharmacology and Therapeutics,2021,26(8):863-875.
|
[14] |
Ngo N K,Hy T S,Kondor R.Modeling polypharmacy and predicting drug-drug interactions using deep generative models on multimodal graphs[J].arXiv:2302.08680,2023.
|
[15] |
Jain S,Chouzenoux E,Kumar K,et al.Graph regularized probabilistic matrix factorization for drug-drug interactions prediction[J].arXiv:2210.10784v1,2022.
|
[16] |
Bengio Y,Courville A,Vincent P.Representation learning:A review and new perspectives[J].IEEE Transactions on Pattern Analysis and Machine Intelligence,2013,35(8):1798-1828.
|
[17] |
Ryu J Y,Kim H U,Lee S Y.Deep learning improves prediction of drug-drug and drug-food interactions[J].Proceedings of the National Academy of Sciences,2018,115(18):E4304-E4311.
|
[18] |
Han C D,Wang C C,Huang L,et al.MCFF-MTDDI:Multi-channel feature fusion for multi-typed drug-drug interaction prediction[J].Briefings in Bioinformatics,2023,24(4):bbad215.
|
[19] |
Lyu T F,Gao J L,Tian L,et al.MDNN:A multimodal deep neural network for predicting drug-drug interaction events[C]∥Proc of the 30th International Joint Conference on Artificial Intelligence,2021:3536-3542.
|
[20] |
Lin X,Quan Z,Wang Z J,et al.KGNN:Knowledge graph neural network for drug-drug interaction prediction[C]∥Proc of the 29th International Joint Conference on Artificial Intelligence,2021: 2739-2745.
|
[21] |
Velickovic P,Cucurull G,Casanova A,et al.Graph attention networks[J].arXiv:1710.10903,2017.
|
[22] |
Wang Y K,Ma H F,Zhang R Y,et al.Drug side effects prediction via heterogeneous multi-relational graph convolutional networks[C]∥Proc of 2022 IEEE 34th International Conference on Tools with Artificial Intelligence,2022:1093-1097.
|
[23] |
Vaswani A,Shazeer N,Parmar N,et al.Attention is all you need[C]∥Proc of the 31st International Conference on Neural Information Processing Systems,2017:6000-6010.
|
[24] |
Hamilton W L,Ying R,Leskovec J.Inductive representation learning on large graphs[C]∥Proc of the 31st International Conference on Neural Information Processing Systems,2017: 1025-1035.
|
[25] |
Zou Q,Xie S F,Lin Z Y,et al.Finding the best classification threshold in imbalanced classification[J].Big Data Research,2016,5:2-8.
|
[26] |
Kanehisa M,Furumichi M,Sato Y,et al.KEGG for taxonomy- based analysis of pathways and genomes[J].Nucleic Acids Research,2023,51(D1):D587-D592.
|
[27] |
Karim M R,Cochez M,Jares J B,et al.Drug-drug interaction prediction based on knowledge graph embeddings and convolutional-LSTM network[C]∥Proc of the 10th ACM International Conference on Bioinformatics,Computational Biology and Health Informatics,2019:113-123.
|
[28] |
Brickley D, Guha R V. Resource description framework (RDF) schema specification:Corpus ID: 262411880[R]. United States:World Wide Web Consortium,1999.
|
[29] |
Belleau F,Nolin M A,Tourigny N,et al.Bio2RDF:Towards a mashup to build bioinformatics knowledge systems[J].Journal of Biomedical Informatics,2008,41(5):706-716.
|
[30] |
Saleem M,Hasnain A,Ngomo A C N.LargeRDFBench:A billion triples benchmark for SPARQL endpoint federation[J].Journal of Web Semantics,2018,48:85-125.
|
[31] |
Gupta R,Malik S K.A classification using RDFLIB and SPARQL on RDF dataset[J].Journal of Information and Optimization Sciences,2022,43(1):143-154.
|
[32] |
Wishart D S,Feunang Y D,Guo A C,et al.DrugBank 5.0:A major update to the DrugBank database for 2018[J].Nucleic Acids Research,2018,46(D1):D1074-D1082.
|
[33] |
Wu Z, Ramsundar B,Feinberg E N,et al.MoleculeNet:A benchmark for molecular machine learning[J].Chemical Science,2018,9(2):513-530.
|
[34] |
高醇,王梦灵.基于特征融合图注意网络的高速公路交通流预测[J].计算机应用,2023,43(10):3114-3120.
|
|
Gao Chun,Wang Meng-ling.Highway traffic flow prediction based on feature fusion graph attention network[J].Journal of Computer Applications,2023,43(10):3114-3120.
|
[35] |
Belkin M,Niyogi P.Laplacian eigenmaps for dimensionality reduction and data representation[J].Neural Computation,2003,15(6):1373-1396.
|
[36] |
Cao S S,Lu W,Xu Q K.GraRep:Learning graph representations with global structural information[C]∥Proc of the 24th ACM International Conference on Information and Knowledge Management,2015:891-900.
|
[37] |
Perozzi B,Al-Rfou R,Skiena S.DeepWalk:Online learning of social representations[C]∥Proc of the 20th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining,2014:701-710.
|
[38] |
Ribeiro L F R,Saverese P H P,Figueiredo D R.struc2vec:Learning node representations from structural identity[C]∥Proc of the 23rd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining,2017:385-394.
|
[39] |
Tang J,Qu M,Wang M,et al.LINE:Large-scale information network embedding[C]∥Proc of the 24th International Conference on World Wide Web,2015:1067-1077.
|
[40] |
Wang D X,Cui P,Zhu W W.Structural deep network embedding[C]∥Proc of the 22nd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining,2016:1225-1234.
|
[41] |
Kipf T N,Welling M.Variational graph auto-encoders[J].arXiv:1611.07308,2016.
|